Lets encrypt DNS propagation

Im trying to merge a live website onto a new server that runs EasyEngine. I’ve changed my cloudflare entries to point the dev box, just to pass lets encrypt verification by easyengine. What I noticed so far is that dns queries are being cached for some domains. One of my domains passed the verification but one other didnt.

After doing a curl, it seems that it still shows the old server, even if dns entries changed fine and I can access the new server from my computer, after accessing the domain through browser.

Is there any way to solve this issue? Are DNS queries being cached by LE ? and for how long? Its not really a good option to change my DNS entries to the dev box just for this step, however, I can do it for 10-15 mins with no issues.

Try clearing the Google Public DNS and Opendns cache

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Tried these with no luck… Opendns cache reports the correct Ip, Google Public DNS reports flush ok, but easyengine is unable to verify the challenge.